A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2018-10-01, 00:00 based on data in:
/mnt/NAS/NASBIO1/DATA/GAMeR_DB/CLOSTRIDIUM
General Statistics
Showing 864 samples.
QUAST
QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.
Assembly Statistics
| Sample Name | N50 (Kbp) | N75 (Kbp) | L50 (K) | L75 (K) | Largest contig (Kbp) | Length (Mbp) | Misassemblies | Mismatches/100kbp | Indels/100kbp | Genes | Genes (Partial) | Genome Fraction |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11-37KF_scaffold_closed | 1985.6Kbp | 356.2Kbp | 0.0K | 2.0K | 1985.6Kbp | 2.9Mbp | 56.0 | 172.57 | 11.86 | 2508 | 63 | 95.2% |
| 15-52KF_scaffold_closed | 3381.3Kbp | 3381.3Kbp | 0.0K | 1.0K | 3381.3Kbp | 3.4Mbp | 60.0 | 1113.08 | 52.38 | 2719 | 38 | 87.1% |
| 15-92KF_scaffold_closed | 2804.2Kbp | 2804.2Kbp | 0.0K | 1.0K | 2804.2Kbp | 2.9Mbp | 145.0 | 1010.26 | 52.69 | 2307 | 63 | 88.5% |
| 15SBCL1664_scaffold_closed | 2772.0Kbp | 2772.0Kbp | 0.0K | 1.0K | 2772.0Kbp | 2.9Mbp | 111.0 | 552.44 | 30.34 | 2353 | 53 | 89.5% |
| 15SBCL801_scaffold_closed | 3222.6Kbp | 3222.6Kbp | 0.0K | 1.0K | 3222.6Kbp | 3.2Mbp | 12.0 | 1.34 | 1.12 | 2951 | 11 | 98.9% |
| 15SBCL899_scaffold_closed | 3191.4Kbp | 3191.4Kbp | 0.0K | 1.0K | 3191.4Kbp | 3.2Mbp | 97.0 | 1445.74 | 72.41 | 2473 | 38 | 83.3% |
| 15SBCL900_scaffold_closed | 3293.1Kbp | 3293.1Kbp | 0.0K | 1.0K | 3293.1Kbp | 3.3Mbp | 93.0 | 1400.38 | 71.31 | 2555 | 49 | 85.6% |
| 16SBCL106_scaffold_closed | 1913.8Kbp | 326.4Kbp | 0.0K | 2.0K | 1913.8Kbp | 2.9Mbp | 132.0 | 297.95 | 19.43 | 2398 | 116 | 92.9% |
| 16SBCL1078_scaffold_closed | 3292.1Kbp | 3292.1Kbp | 0.0K | 1.0K | 3292.1Kbp | 3.3Mbp | 90.0 | 2267.06 | 105.71 | 2494 | 46 | 84.8% |
| 16SBCL1079_scaffold_closed | 3242.2Kbp | 3242.2Kbp | 0.0K | 1.0K | 3242.2Kbp | 3.3Mbp | 52.0 | 1034.47 | 46.29 | 2705 | 30 | 86.8% |
| 16SBCL107_scaffold_closed | 2185.3Kbp | 475.4Kbp | 0.0K | 2.0K | 2185.3Kbp | 2.9Mbp | 98.0 | 487.79 | 29.31 | 2407 | 68 | 91.4% |
| 16SBCL1080_scaffold_closed | 3296.8Kbp | 3296.8Kbp | 0.0K | 1.0K | 3296.8Kbp | 3.3Mbp | 56.0 | 1048.24 | 46.59 | 2721 | 29 | 87.0% |
| 16SBCL1081_scaffold_closed | 3292.0Kbp | 3292.0Kbp | 0.0K | 1.0K | 3292.0Kbp | 3.3Mbp | 93.0 | 2329.33 | 107.95 | 2494 | 46 | 84.8% |
| 16SBCL1082_scaffold_closed | 3293.7Kbp | 3293.7Kbp | 0.0K | 1.0K | 3293.7Kbp | 3.3Mbp | 56.0 | 1044.42 | 46.98 | 2717 | 29 | 87.0% |
| 16SBCL1083_scaffold_closed | 3208.4Kbp | 3208.4Kbp | 0.0K | 1.0K | 3208.4Kbp | 3.2Mbp | 85.0 | 1145.67 | 52.23 | 2583 | 58 | 87.4% |
| 16SBCL109_scaffold_closed | 2834.1Kbp | 2834.1Kbp | 0.0K | 1.0K | 2834.1Kbp | 3.0Mbp | 123.0 | 438.66 | 24.03 | 2391 | 78 | 91.3% |
| 16SBCL110_scaffold_closed | 2610.2Kbp | 2610.2Kbp | 0.0K | 1.0K | 2610.2Kbp | 2.8Mbp | 126.0 | 999.83 | 52.14 | 2305 | 58 | 88.0% |
| 16SBCL111_scaffold_closed | 3114.3Kbp | 3114.3Kbp | 0.0K | 1.0K | 3114.3Kbp | 3.2Mbp | 144.0 | 1376.64 | 66.96 | 2445 | 131 | 85.3% |
| 16SBCL1126_scaffold_closed | 1122.5Kbp | 1122.5Kbp | 0.0K | 2.0K | 1271.4Kbp | 3.0Mbp | 105.0 | 452.42 | 25.68 | 2391 | 65 | 91.1% |
| 16SBCL1127_scaffold_closed | 3003.9Kbp | 3003.9Kbp | 0.0K | 1.0K | 3003.9Kbp | 3.0Mbp | 102.0 | 454.25 | 25.34 | 2398 | 75 | 91.2% |
| 16SBCL1128_scaffold_closed | 2428.3Kbp | 2428.3Kbp | 0.0K | 1.0K | 2428.3Kbp | 3.0Mbp | 109.0 | 444.86 | 25.31 | 2391 | 75 | 91.4% |
| 16SBCL1129_scaffold_closed | 2092.4Kbp | 325.0Kbp | 0.0K | 2.0K | 2092.4Kbp | 3.0Mbp | 118.0 | 455.34 | 25.91 | 2401 | 76 | 91.4% |
| 16SBCL1130_scaffold_closed | 2359.5Kbp | 2359.5Kbp | 0.0K | 1.0K | 2359.5Kbp | 3.0Mbp | 133.0 | 454.92 | 25.93 | 2397 | 79 | 91.4% |
| 16SBCL113_scaffold_closed | 2872.5Kbp | 2872.5Kbp | 0.0K | 1.0K | 2872.5Kbp | 2.9Mbp | 91.0 | 385.14 | 22.55 | 2422 | 64 | 92.3% |
| 16SBCL1141_scaffold_closed | 3154.4Kbp | 3154.4Kbp | 0.0K | 1.0K | 3154.4Kbp | 3.2Mbp | 73.0 | 1156.18 | 54.75 | 2606 | 45 | 87.9% |
| 16SBCL1142_scaffold_closed | 3329.8Kbp | 3329.8Kbp | 0.0K | 1.0K | 3329.8Kbp | 3.3Mbp | 54.0 | 827.66 | 42.84 | 2685 | 39 | 91.0% |
| 16SBCL1143_scaffold_closed | 3281.5Kbp | 3281.5Kbp | 0.0K | 1.0K | 3281.5Kbp | 3.4Mbp | 60.0 | 771.27 | 35.87 | 2639 | 39 | 89.8% |
| 16SBCL1144_scaffold_closed | 3102.2Kbp | 3102.2Kbp | 0.0K | 1.0K | 3102.2Kbp | 3.2Mbp | 112.0 | 1366.52 | 65.03 | 2491 | 63 | 84.6% |
| 16SBCL1344_scaffold_closed | 3236.0Kbp | 3236.0Kbp | 0.0K | 1.0K | 3236.0Kbp | 3.5Mbp | 59.0 | 837.88 | 39.42 | 2709 | 35 | 91.7% |
| 16SBCL1431_scaffold_closed | 2910.4Kbp | 2910.4Kbp | 0.0K | 1.0K | 2910.4Kbp | 2.9Mbp | 122.0 | 1011.21 | 53.61 | 2286 | 53 | 87.7% |
| 16SBCL1432_scaffold_closed | 2480.1Kbp | 2480.1Kbp | 0.0K | 1.0K | 2480.1Kbp | 2.9Mbp | 123.0 | 993.79 | 51.98 | 2291 | 63 | 87.8% |
| 16SBCL1433_scaffold_closed | 2661.5Kbp | 2661.5Kbp | 0.0K | 1.0K | 2661.5Kbp | 2.9Mbp | 127.0 | 996.31 | 52.59 | 2288 | 64 | 87.7% |
| 16SBCL1434_scaffold_closed | 2903.7Kbp | 2903.7Kbp | 0.0K | 1.0K | 2903.7Kbp | 2.9Mbp | 130.0 | 995.05 | 52.56 | 2299 | 60 | 87.8% |
| 16SBCL1435_scaffold_closed | 2464.9Kbp | 2464.9Kbp | 0.0K | 1.0K | 2464.9Kbp | 2.9Mbp | 137.0 | 983.17 | 51.39 | 2292 | 64 | 87.8% |
| 16SBCL1552_scaffold_closed | 2918.4Kbp | 2918.4Kbp | 0.0K | 1.0K | 2918.4Kbp | 3.0Mbp | 91.0 | 3076.22 | 136.50 | 2152 | 52 | 71.9% |
| 16SBCL1584_scaffold_closed | 2917.4Kbp | 2917.4Kbp | 0.0K | 1.0K | 2917.4Kbp | 2.9Mbp | 113.0 | 448.29 | 25.31 | 2366 | 70 | 90.8% |
| 16SBCL1585_scaffold_closed | 2461.6Kbp | 2461.6Kbp | 0.0K | 1.0K | 2461.6Kbp | 2.9Mbp | 102.0 | 452.22 | 25.20 | 2383 | 68 | 90.9% |
| 16SBCL1586_scaffold_closed | 1774.4Kbp | 458.5Kbp | 0.0K | 2.0K | 1774.4Kbp | 2.9Mbp | 97.0 | 449.17 | 25.89 | 2381 | 67 | 90.8% |
| 16SBCL1587_scaffold_closed | 2336.2Kbp | 2336.2Kbp | 0.0K | 1.0K | 2336.2Kbp | 2.9Mbp | 99.0 | 452.63 | 25.88 | 2372 | 69 | 90.8% |
| 16SBCL1588_scaffold_closed | 2862.4Kbp | 2862.4Kbp | 0.0K | 1.0K | 2862.4Kbp | 2.9Mbp | 118.0 | 451.09 | 25.36 | 2380 | 83 | 91.1% |
| 16SBCL1589_scaffold_closed | 3282.4Kbp | 3282.4Kbp | 0.0K | 1.0K | 3282.4Kbp | 3.4Mbp | 65.0 | 908.09 | 43.52 | 2643 | 47 | 89.5% |
| 16SBCL1590_scaffold_closed | 3164.4Kbp | 3164.4Kbp | 0.0K | 1.0K | 3164.4Kbp | 3.2Mbp | 88.0 | 1230.64 | 61.70 | 2592 | 55 | 87.1% |
| 16SBCL1591_scaffold_closed | 3232.0Kbp | 3232.0Kbp | 0.0K | 1.0K | 3232.0Kbp | 3.4Mbp | 48.0 | 459.47 | 24.81 | 2634 | 40 | 90.5% |
| 16SBCL1592_scaffold_closed | 2994.1Kbp | 2994.1Kbp | 0.0K | 1.0K | 2994.1Kbp | 3.0Mbp | 89.0 | 3088.33 | 136.85 | 2159 | 48 | 72.2% |
| 16SBCL525_scaffold_closed | 3264.1Kbp | 3264.1Kbp | 0.0K | 1.0K | 3264.1Kbp | 3.4Mbp | 76.0 | 1203.61 | 57.68 | 2664 | 53 | 90.1% |
| 16SBCL528_scaffold_closed | 2103.7Kbp | 450.6Kbp | 0.0K | 2.0K | 2103.7Kbp | 2.9Mbp | 98.0 | 384.90 | 22.46 | 2441 | 73 | 92.8% |
| 16SBCL529_scaffold_closed | 1471.8Kbp | 1175.5Kbp | 0.0K | 2.0K | 1471.8Kbp | 2.9Mbp | 92.0 | 384.92 | 21.91 | 2438 | 53 | 92.6% |
| 16SBCL530_scaffold_closed | 2419.5Kbp | 2419.5Kbp | 0.0K | 1.0K | 2419.5Kbp | 2.9Mbp | 98.0 | 381.83 | 24.09 | 2439 | 66 | 92.8% |
| 16SBCL531_scaffold_closed | 1657.9Kbp | 285.6Kbp | 0.0K | 3.0K | 1657.9Kbp | 2.9Mbp | 86.0 | 378.71 | 22.74 | 2442 | 59 | 92.7% |
| 16SBCL532_scaffold_closed | 2259.8Kbp | 2259.8Kbp | 0.0K | 1.0K | 2259.8Kbp | 2.9Mbp | 93.0 | 381.92 | 22.64 | 2439 | 71 | 92.9% |
| 16SBCL537_scaffold_closed | 3176.5Kbp | 3176.5Kbp | 0.0K | 1.0K | 3176.5Kbp | 3.2Mbp | 63.0 | 1156.58 | 54.94 | 2667 | 42 | 89.8% |
| 16SBCL538_scaffold_closed | 3038.0Kbp | 3038.0Kbp | 0.0K | 1.0K | 3038.0Kbp | 3.1Mbp | 90.0 | 3063.10 | 136.11 | 2166 | 43 | 71.4% |
| 16SBCL563_scaffold_closed | 2731.0Kbp | 2731.0Kbp | 0.0K | 1.0K | 2731.0Kbp | 3.0Mbp | 72.0 | 167.40 | 11.24 | 2498 | 64 | 94.9% |
| 16SBCL564_scaffold_closed | 2448.6Kbp | 2448.6Kbp | 0.0K | 1.0K | 2448.6Kbp | 3.0Mbp | 55.0 | 166.96 | 11.28 | 2502 | 52 | 94.9% |
| 16SBCL565_scaffold_closed | 2484.6Kbp | 2484.6Kbp | 0.0K | 1.0K | 2484.6Kbp | 2.9Mbp | 65.0 | 165.04 | 11.43 | 2503 | 45 | 94.9% |
| 16SBCL566_scaffold_closed | 2335.3Kbp | 2335.3Kbp | 0.0K | 1.0K | 2335.3Kbp | 3.0Mbp | 68.0 | 171.21 | 13.41 | 2502 | 52 | 94.9% |
| 16SBCL567_scaffold_closed | 2576.2Kbp | 2576.2Kbp | 0.0K | 1.0K | 2576.2Kbp | 3.0Mbp | 65.0 | 170.01 | 11.82 | 2501 | 58 | 94.9% |
| 16SBCL570_scaffold_closed | 3280.9Kbp | 3280.9Kbp | 0.0K | 1.0K | 3280.9Kbp | 3.4Mbp | 43.0 | 866.70 | 39.58 | 2721 | 33 | 91.6% |
| 16SBCL571_scaffold_closed | 4265.8Kbp | 782.3Kbp | 0.0K | 2.0K | 4265.8Kbp | 5.9Mbp | 991.0 | 1657.65 | 79.01 | 1578 | 1022 | 82.7% |
| 16SBCL572_scaffold_closed | 5036.6Kbp | 5036.6Kbp | 0.0K | 1.0K | 5036.6Kbp | 5.6Mbp | 1043.0 | 1675.90 | 83.36 | 1635 | 1000 | 83.7% |
| 16SBCL575_scaffold_closed | 3293.7Kbp | 3293.7Kbp | 0.0K | 1.0K | 3293.7Kbp | 3.3Mbp | 90.0 | 1413.13 | 70.93 | 2553 | 49 | 85.6% |
| 16SBCL576_scaffold_closed | 3203.5Kbp | 3203.5Kbp | 0.0K | 1.0K | 3203.5Kbp | 4.2Mbp | 104.0 | 1411.36 | 63.10 | 2486 | 49 | 84.4% |
| 16SBCL577_scaffold_closed | 2603.9Kbp | 2603.9Kbp | 0.0K | 1.0K | 2603.9Kbp | 3.0Mbp | 78.0 | 166.59 | 12.88 | 2494 | 54 | 94.8% |
| 16SBCL578_scaffold_closed | 3335.5Kbp | 3335.5Kbp | 0.0K | 1.0K | 3335.5Kbp | 3.4Mbp | 74.0 | 1312.24 | 61.15 | 2657 | 39 | 89.8% |
| 16SBCL579_scaffold_closed | 3377.5Kbp | 3377.5Kbp | 0.0K | 1.0K | 3377.5Kbp | 3.5Mbp | 81.0 | 1174.27 | 54.11 | 2671 | 53 | 90.0% |
| 16SBCL580_scaffold_closed | 2438.9Kbp | 2438.9Kbp | 0.0K | 1.0K | 2438.9Kbp | 2.9Mbp | 105.0 | 453.80 | 25.41 | 2386 | 60 | 90.9% |
| 16SBCL581_scaffold_closed | 2167.5Kbp | 635.4Kbp | 0.0K | 2.0K | 2167.5Kbp | 2.9Mbp | 107.0 | 455.73 | 26.05 | 2381 | 67 | 90.9% |
| 16SBCL582_scaffold_closed | 1803.8Kbp | 594.5Kbp | 0.0K | 2.0K | 1803.8Kbp | 2.9Mbp | 106.0 | 456.67 | 26.73 | 2385 | 69 | 91.0% |
| 16SBCL583_scaffold_closed | 2885.0Kbp | 2885.0Kbp | 0.0K | 1.0K | 2885.0Kbp | 2.9Mbp | 109.0 | 453.85 | 25.82 | 2385 | 64 | 91.0% |
| 16SBCL584_scaffold_closed | 2360.5Kbp | 369.5Kbp | 0.0K | 2.0K | 2360.5Kbp | 3.3Mbp | 187.0 | 207.17 | 15.28 | 2404 | 158 | 94.9% |
| 16SBCL585_scaffold_closed | 2901.3Kbp | 2901.3Kbp | 0.0K | 1.0K | 2901.3Kbp | 2.9Mbp | 107.0 | 446.13 | 24.83 | 2372 | 70 | 91.0% |
| 16SBCL586_scaffold_closed | 1940.2Kbp | 465.9Kbp | 0.0K | 2.0K | 1940.2Kbp | 2.9Mbp | 100.0 | 455.19 | 25.92 | 2386 | 75 | 91.1% |
| 16SBCL587_scaffold_closed | 2676.9Kbp | 2676.9Kbp | 0.0K | 1.0K | 2676.9Kbp | 2.9Mbp | 116.0 | 455.77 | 26.71 | 2383 | 62 | 91.0% |
| 16SBCL588_scaffold_closed | 2444.1Kbp | 2444.1Kbp | 0.0K | 1.0K | 2444.1Kbp | 2.9Mbp | 93.0 | 449.59 | 25.75 | 2387 | 74 | 91.0% |
| 16SBCL589_scaffold_closed | 2813.8Kbp | 2813.8Kbp | 0.0K | 1.0K | 2813.8Kbp | 2.9Mbp | 108.0 | 454.15 | 25.72 | 2387 | 58 | 91.0% |
| 16SBCL590A_scaffold_closed | 1127.4Kbp | 1127.4Kbp | 0.0K | 2.0K | 1305.2Kbp | 2.9Mbp | 95.0 | 455.16 | 26.15 | 2382 | 79 | 91.1% |
| 16SBCL590B_scaffold_closed | 2376.4Kbp | 2376.4Kbp | 0.0K | 1.0K | 2376.4Kbp | 2.9Mbp | 98.0 | 448.34 | 25.64 | 2378 | 74 | 91.0% |
| 16SBCL591_scaffold_closed | 2794.4Kbp | 2794.4Kbp | 0.0K | 1.0K | 2794.4Kbp | 2.9Mbp | 107.0 | 456.81 | 25.98 | 2379 | 56 | 90.9% |
| 16SBCL592A_scaffold_closed | 2859.7Kbp | 2859.7Kbp | 0.0K | 1.0K | 2859.7Kbp | 2.9Mbp | 100.0 | 446.98 | 24.48 | 2377 | 70 | 90.9% |
| 16SBCL592B_scaffold_closed | 2898.5Kbp | 2898.5Kbp | 0.0K | 1.0K | 2898.5Kbp | 2.9Mbp | 99.0 | 452.35 | 25.05 | 2374 | 70 | 90.9% |
| 16SBCL593A_scaffold_closed | 2916.3Kbp | 2916.3Kbp | 0.0K | 1.0K | 2916.3Kbp | 2.9Mbp | 95.0 | 453.62 | 25.82 | 2384 | 58 | 90.9% |
| 16SBCL593B_scaffold_closed | 2648.9Kbp | 2648.9Kbp | 0.0K | 1.0K | 2648.9Kbp | 2.9Mbp | 104.0 | 457.42 | 25.88 | 2380 | 76 | 90.9% |
| 16SBCL595_scaffold_closed | 3220.9Kbp | 3220.9Kbp | 0.0K | 1.0K | 3220.9Kbp | 3.3Mbp | 64.0 | 1138.71 | 54.88 | 2661 | 39 | 90.0% |
| 16SBCL596A_scaffold_closed | 3304.1Kbp | 3304.1Kbp | 0.0K | 1.0K | 3304.1Kbp | 3.4Mbp | 67.0 | 1087.55 | 55.26 | 2699 | 43 | 91.1% |
| 16SBCL596B_scaffold_closed | 3203.9Kbp | 3203.9Kbp | 0.0K | 1.0K | 3203.9Kbp | 3.4Mbp | 65.0 | 1105.96 | 55.27 | 2694 | 42 | 91.1% |
| 16SBCL599_scaffold_closed | 1153.6Kbp | 1153.6Kbp | 0.0K | 2.0K | 1193.9Kbp | 2.9Mbp | 109.0 | 456.03 | 25.98 | 2376 | 77 | 91.1% |
| 16SBCL600_scaffold_closed | 3261.7Kbp | 3261.7Kbp | 0.0K | 1.0K | 3261.7Kbp | 3.3Mbp | 40.0 | 654.97 | 33.14 | 2732 | 33 | 92.3% |
| 16SBCL601_scaffold_closed | 3141.4Kbp | 3141.4Kbp | 0.0K | 1.0K | 3141.4Kbp | 3.2Mbp | 54.0 | 839.02 | 37.27 | 2612 | 31 | 88.3% |
| 16SBCL602_scaffold_closed | 3140.0Kbp | 3140.0Kbp | 0.0K | 1.0K | 3140.0Kbp | 3.2Mbp | 55.0 | 838.28 | 37.15 | 2603 | 26 | 88.3% |
| 16SBCL603_scaffold_closed | 3211.7Kbp | 3211.7Kbp | 0.0K | 1.0K | 3211.7Kbp | 3.3Mbp | 34.0 | 659.77 | 32.88 | 2729 | 36 | 92.3% |
| 16SBCL604_scaffold_closed | 3256.2Kbp | 3256.2Kbp | 0.0K | 1.0K | 3256.2Kbp | 3.3Mbp | 40.0 | 644.56 | 31.88 | 2724 | 37 | 92.3% |
| 16SBCL605_scaffold_closed | 2923.9Kbp | 2923.9Kbp | 0.0K | 1.0K | 2923.9Kbp | 2.9Mbp | 104.0 | 437.52 | 26.10 | 2410 | 67 | 92.0% |
| 16SBCL606_scaffold_closed | 2784.2Kbp | 2784.2Kbp | 0.0K | 1.0K | 2784.2Kbp | 2.9Mbp | 100.0 | 450.83 | 26.74 | 2409 | 65 | 91.8% |
| 16SBCL607_scaffold_closed | 2288.2Kbp | 2288.2Kbp | 0.0K | 1.0K | 2288.2Kbp | 2.9Mbp | 98.0 | 446.76 | 26.09 | 2417 | 65 | 91.9% |
| 16SBCL608_scaffold_closed | 2261.0Kbp | 2261.0Kbp | 0.0K | 1.0K | 2261.0Kbp | 2.9Mbp | 91.0 | 450.31 | 26.80 | 2387 | 65 | 90.8% |
| 16SBCL609_scaffold_closed | 2912.9Kbp | 2912.9Kbp | 0.0K | 1.0K | 2912.9Kbp | 2.9Mbp | 85.0 | 474.02 | 27.89 | 2400 | 70 | 91.3% |
| 16SBCL610_scaffold_closed | 3180.6Kbp | 3180.6Kbp | 0.0K | 1.0K | 3180.6Kbp | 3.3Mbp | 53.0 | 745.11 | 35.97 | 2709 | 27 | 90.8% |
| 16SBCL611_scaffold_closed | 3139.0Kbp | 3139.0Kbp | 0.0K | 1.0K | 3139.0Kbp | 3.3Mbp | 49.0 | 747.36 | 36.88 | 2704 | 30 | 90.9% |
| 16SBCL615_scaffold_closed | 2633.6Kbp | 2633.6Kbp | 0.0K | 1.0K | 2633.6Kbp | 3.0Mbp | 129.0 | 1007.36 | 53.94 | 2299 | 61 | 88.2% |
| 16SBCL616_scaffold_closed | 2784.2Kbp | 2784.2Kbp | 0.0K | 1.0K | 2784.2Kbp | 3.0Mbp | 124.0 | 1009.39 | 52.36 | 2302 | 67 | 88.3% |
| 16SBCL617_scaffold_closed | 2860.0Kbp | 2860.0Kbp | 0.0K | 1.0K | 2860.0Kbp | 3.0Mbp | 122.0 | 1011.08 | 53.16 | 2304 | 62 | 88.3% |
| 16SBCL618_scaffold_closed | 2870.2Kbp | 2870.2Kbp | 0.0K | 1.0K | 2870.2Kbp | 3.0Mbp | 167.0 | 1010.29 | 52.31 | 2298 | 88 | 88.8% |
| 16SBCL620_scaffold_closed | 2883.0Kbp | 2883.0Kbp | 0.0K | 1.0K | 2883.0Kbp | 3.3Mbp | 60.0 | 1125.35 | 51.53 | 2683 | 37 | 90.9% |
| 16SBCL621_scaffold_closed | 2649.2Kbp | 2649.2Kbp | 0.0K | 1.0K | 2649.2Kbp | 3.1Mbp | 96.0 | 1419.78 | 69.07 | 2524 | 58 | 85.9% |
| 16SBCL624_scaffold_closed | 2827.1Kbp | 2827.1Kbp | 0.0K | 1.0K | 2827.1Kbp | 2.9Mbp | 160.0 | 1008.18 | 57.35 | 2246 | 83 | 87.0% |
| 16SBCL625_scaffold_closed | 2905.4Kbp | 2905.4Kbp | 0.0K | 1.0K | 2905.4Kbp | 2.9Mbp | 130.0 | 1008.67 | 54.97 | 2292 | 55 | 87.8% |
| 16SBCL627_scaffold_closed | 2905.6Kbp | 2905.6Kbp | 0.0K | 1.0K | 2905.6Kbp | 2.9Mbp | 127.0 | 1042.64 | 55.94 | 2286 | 60 | 87.7% |
| 16SBCL628_scaffold_closed | 2907.5Kbp | 2907.5Kbp | 0.0K | 1.0K | 2907.5Kbp | 2.9Mbp | 122.0 | 1009.26 | 55.29 | 2286 | 58 | 87.8% |
| 16SBCL629_scaffold_closed | 3225.9Kbp | 3225.9Kbp | 0.0K | 1.0K | 3225.9Kbp | 3.3Mbp | 57.0 | 1166.72 | 51.37 | 2676 | 41 | 90.8% |
| 16SBCL631_scaffold_closed | 2796.5Kbp | 2796.5Kbp | 0.0K | 1.0K | 2796.5Kbp | 3.4Mbp | 53.0 | 833.23 | 40.41 | 2710 | 36 | 91.6% |
| 16SBCL632_scaffold_closed | 3206.7Kbp | 3206.7Kbp | 0.0K | 1.0K | 3206.7Kbp | 3.3Mbp | 55.0 | 1196.19 | 53.54 | 2683 | 38 | 90.6% |
| 16SBCL648_scaffold_closed | 3324.9Kbp | 3324.9Kbp | 0.0K | 1.0K | 3324.9Kbp | 3.5Mbp | 88.0 | 1238.25 | 59.51 | 2602 | 62 | 87.8% |
| 16SBCL816_scaffold_closed | 3190.6Kbp | 3190.6Kbp | 0.0K | 1.0K | 3190.6Kbp | 3.5Mbp | 105.0 | 1419.98 | 70.23 | 2486 | 60 | 84.5% |
| 16SBCL939_scaffold_closed | 2618.0Kbp | 2618.0Kbp | 0.0K | 1.0K | 2618.0Kbp | 2.9Mbp | 100.0 | 383.75 | 23.23 | 2442 | 48 | 92.7% |
| 16SBCL940_scaffold_closed | 2635.1Kbp | 2635.1Kbp | 0.0K | 1.0K | 2635.1Kbp | 2.9Mbp | 91.0 | 382.62 | 21.95 | 2442 | 48 | 92.6% |
| 16SBCL941_scaffold_closed | 2287.2Kbp | 2287.2Kbp | 0.0K | 1.0K | 2287.2Kbp | 2.9Mbp | 105.0 | 373.55 | 22.03 | 2444 | 73 | 92.9% |
| 16SBCL942_scaffold_closed | 2625.0Kbp | 2625.0Kbp | 0.0K | 1.0K | 2625.0Kbp | 2.9Mbp | 101.0 | 383.93 | 22.54 | 2434 | 70 | 92.8% |
| 16SBCL943_scaffold_closed | 1994.5Kbp | 383.3Kbp | 0.0K | 2.0K | 1994.5Kbp | 2.9Mbp | 84.0 | 385.78 | 22.93 | 2446 | 47 | 92.7% |
| 16SBCL944_scaffold_closed | 2486.0Kbp | 2486.0Kbp | 0.0K | 1.0K | 2486.0Kbp | 2.9Mbp | 82.0 | 383.01 | 23.11 | 2441 | 52 | 92.6% |
| 16SBCL945_scaffold_closed | 2795.3Kbp | 2795.3Kbp | 0.0K | 1.0K | 2795.3Kbp | 2.9Mbp | 91.0 | 377.77 | 21.83 | 2448 | 44 | 92.7% |
| 17SBCL1132_scaffold_closed | 3263.8Kbp | 3263.8Kbp | 0.0K | 1.0K | 3263.8Kbp | 3.3Mbp | 44.0 | 811.65 | 39.38 | 2715 | 37 | 91.9% |
| 17SBCL1133_scaffold_closed | 3240.3Kbp | 3240.3Kbp | 0.0K | 1.0K | 3240.3Kbp | 3.7Mbp | 64.0 | 959.67 | 47.49 | 2662 | 71 | 90.6% |
| 17SBCL1134_scaffold_closed | 3161.9Kbp | 3161.9Kbp | 0.0K | 1.0K | 3161.9Kbp | 3.3Mbp | 97.0 | 1183.24 | 60.80 | 2566 | 50 | 85.7% |
| 17SBCL1136_scaffold_closed | 2377.3Kbp | 2377.3Kbp | 0.0K | 1.0K | 2377.3Kbp | 2.9Mbp | 69.0 | 65.14 | 6.11 | 2538 | 43 | 96.0% |
| 17SBCL1137_scaffold_closed | 1662.1Kbp | 188.2Kbp | 0.0K | 4.0K | 1662.1Kbp | 3.0Mbp | 128.0 | 386.38 | 24.29 | 2368 | 118 | 91.9% |
| 17SBCL19_scaffold_closed | 2880.0Kbp | 2880.0Kbp | 0.0K | 1.0K | 2880.0Kbp | 2.9Mbp | 108.0 | 447.46 | 23.15 | 2371 | 56 | 90.3% |
| 17SBCL20_scaffold_closed | 2886.4Kbp | 2886.4Kbp | 0.0K | 1.0K | 2886.4Kbp | 2.9Mbp | 115.0 | 446.73 | 23.89 | 2368 | 71 | 90.4% |
| 17SBCL21_scaffold_closed | 2810.3Kbp | 2810.3Kbp | 0.0K | 1.0K | 2810.3Kbp | 2.9Mbp | 111.0 | 447.15 | 24.22 | 2364 | 73 | 90.2% |
| 17SBCL22_scaffold_closed | 2885.0Kbp | 2885.0Kbp | 0.0K | 1.0K | 2885.0Kbp | 2.9Mbp | 107.0 | 451.07 | 24.36 | 2369 | 73 | 90.4% |
| 17SBCL23_scaffold_closed | 2730.5Kbp | 2730.5Kbp | 0.0K | 1.0K | 2730.5Kbp | 2.9Mbp | 92.0 | 447.37 | 23.88 | 2365 | 73 | 90.3% |
| 17SBCL335_scaffold_closed | 3322.5Kbp | 3322.5Kbp | 0.0K | 1.0K | 3322.5Kbp | 3.3Mbp | 62.0 | 1152.71 | 52.70 | 2697 | 33 | 90.6% |
| 17SBCL336_scaffold_closed | 3322.1Kbp | 3322.1Kbp | 0.0K | 1.0K | 3322.1Kbp | 3.3Mbp | 60.0 | 1174.32 | 52.77 | 2697 | 34 | 90.5% |
| 17SBCL337_scaffold_closed | 3321.8Kbp | 3321.8Kbp | 0.0K | 1.0K | 3321.8Kbp | 3.3Mbp | 64.0 | 1176.21 | 53.35 | 2695 | 34 | 90.5% |
| 17SBCL338_scaffold_closed | 3317.4Kbp | 3317.4Kbp | 0.0K | 1.0K | 3317.4Kbp | 3.3Mbp | 58.0 | 1173.72 | 53.40 | 2691 | 35 | 90.5% |
| 17SBCL339_scaffold_closed | 3228.2Kbp | 3228.2Kbp | 0.0K | 1.0K | 3228.2Kbp | 3.3Mbp | 58.0 | 1173.36 | 53.10 | 2693 | 36 | 90.6% |
| 17SBCL67_scaffold_closed | 3188.5Kbp | 3188.5Kbp | 0.0K | 1.0K | 3188.5Kbp | 3.3Mbp | 53.0 | 818.78 | 39.82 | 2667 | 49 | 90.0% |
| 17SBCL767_scaffold_closed | 3277.4Kbp | 3277.4Kbp | 0.0K | 1.0K | 3277.4Kbp | 3.5Mbp | 64.0 | 937.41 | 47.93 | 2598 | 51 | 87.9% |
| 17SBCL768_scaffold_closed | 3203.2Kbp | 3203.2Kbp | 0.0K | 1.0K | 3203.2Kbp | 3.5Mbp | 101.0 | 1141.80 | 57.06 | 2590 | 49 | 87.0% |
| 17SBCL79_scaffold_closed | 3229.4Kbp | 3229.4Kbp | 0.0K | 1.0K | 3229.4Kbp | 3.4Mbp | 52.0 | 717.02 | 34.52 | 2737 | 30 | 92.1% |
| 17SBCL80_scaffold_closed | 3141.8Kbp | 3141.8Kbp | 0.0K | 1.0K | 3141.8Kbp | 3.4Mbp | 52.0 | 712.02 | 34.09 | 2739 | 34 | 92.0% |
| 17SBCL81_scaffold_closed | 3454.3Kbp | 3454.3Kbp | 0.0K | 1.0K | 3454.3Kbp | 3.6Mbp | 56.0 | 722.03 | 34.06 | 2735 | 31 | 92.0% |
| 17SBCL82_scaffold_closed | 3227.9Kbp | 3227.9Kbp | 0.0K | 1.0K | 3227.9Kbp | 3.4Mbp | 52.0 | 717.81 | 34.24 | 2733 | 34 | 92.0% |
| 17SBCL83_scaffold_closed | 2766.4Kbp | 2766.4Kbp | 0.0K | 1.0K | 2766.4Kbp | 3.5Mbp | 56.0 | 720.13 | 34.23 | 2738 | 33 | 92.1% |
| 17SBCL85_scaffold_closed | 3230.8Kbp | 3230.8Kbp | 0.0K | 1.0K | 3230.8Kbp | 3.4Mbp | 52.0 | 708.10 | 34.25 | 2742 | 33 | 92.1% |
| 17SBCL86_scaffold_closed | 3228.8Kbp | 3228.8Kbp | 0.0K | 1.0K | 3228.8Kbp | 3.4Mbp | 53.0 | 714.31 | 34.19 | 2739 | 32 | 92.1% |
| 17SBCL87_scaffold_closed | 3228.7Kbp | 3228.7Kbp | 0.0K | 1.0K | 3228.7Kbp | 3.4Mbp | 52.0 | 720.27 | 34.33 | 2736 | 34 | 92.0% |
| 17SBCL88_scaffold_closed | 3228.0Kbp | 3228.0Kbp | 0.0K | 1.0K | 3228.0Kbp | 3.4Mbp | 53.0 | 710.66 | 33.89 | 2740 | 31 | 92.0% |
| 17SBSCL512_scaffold_closed | 2322.3Kbp | 2322.3Kbp | 0.0K | 1.0K | 2322.3Kbp | 2.9Mbp | 63.0 | 175.14 | 12.85 | 2508 | 45 | 95.0% |
| 17SBSCL513_scaffold_closed | 2482.5Kbp | 2482.5Kbp | 0.0K | 1.0K | 2482.5Kbp | 2.9Mbp | 69.0 | 172.07 | 13.25 | 2500 | 56 | 95.1% |
| 17SBSCL738_scaffold_closed | 2742.6Kbp | 2742.6Kbp | 0.0K | 1.0K | 2742.6Kbp | 2.9Mbp | 150.0 | 986.32 | 52.60 | 2296 | 60 | 88.4% |
| 17SBSCL739_scaffold_closed | 2654.7Kbp | 2654.7Kbp | 0.0K | 1.0K | 2654.7Kbp | 2.9Mbp | 141.0 | 989.23 | 52.89 | 2298 | 65 | 88.4% |
| 18SBCL173_scaffold_closed | 2735.2Kbp | 2735.2Kbp | 0.0K | 1.0K | 2735.2Kbp | 2.9Mbp | 99.0 | 433.74 | 24.39 | 2456 | 67 | 93.2% |
| B16-24350-1CP_scaffold_closed | 3275.9Kbp | 3275.9Kbp | 0.0K | 1.0K | 3275.9Kbp | 3.5Mbp | 90.0 | 2365.90 | 113.64 | 2296 | 88 | 78.4% |
| B16-24350-3CP_scaffold_closed | 3214.0Kbp | 3214.0Kbp | 0.0K | 1.0K | 3214.0Kbp | 3.5Mbp | 105.0 | 2353.46 | 109.14 | 2248 | 107 | 77.3% |
| CC88A_scaffold | 2415.0Kbp | 111.2Kbp | 0.0K | 4.0K | 2415.0Kbp | 3.6Mbp | 0.0 | 2679.94 | 267.99 | 3 | 1 | 0.1% |
| NY82539716_scaffold_closed | 3005.1Kbp | 3005.1Kbp | 0.0K | 1.0K | 3005.1Kbp | 3.1Mbp | 104.0 | 390.35 | 21.47 | 2450 | 77 | 93.2% |
| NY82539841_scaffold_closed | 3284.8Kbp | 3284.8Kbp | 0.0K | 1.0K | 3284.8Kbp | 3.4Mbp | 71.0 | 1227.72 | 57.56 | 2656 | 45 | 88.6% |
| NY82540082_scaffold_closed | 3297.3Kbp | 3297.3Kbp | 0.0K | 1.0K | 3297.3Kbp | 3.5Mbp | 85.0 | 1221.57 | 56.99 | 2659 | 52 | 89.1% |
| NY82540322_scaffold_closed | 3081.3Kbp | 3081.3Kbp | 0.0K | 1.0K | 3081.3Kbp | 3.2Mbp | 124.0 | 1461.92 | 70.28 | 2477 | 83 | 83.2% |
| NY82540577_scaffold_closed | 2908.9Kbp | 2908.9Kbp | 0.0K | 1.0K | 2908.9Kbp | 3.0Mbp | 101.0 | 403.90 | 26.24 | 2423 | 77 | 91.8% |
| NY82540655_scaffold_closed | 2919.8Kbp | 2919.8Kbp | 0.0K | 1.0K | 2919.8Kbp | 3.0Mbp | 109.0 | 407.64 | 25.86 | 2423 | 89 | 92.3% |
| NY82540943_scaffold_closed | 3087.9Kbp | 3087.9Kbp | 0.0K | 1.0K | 3087.9Kbp | 3.2Mbp | 123.0 | 1455.40 | 74.02 | 2454 | 89 | 82.6% |
| NY82541080_scaffold_closed | 2920.4Kbp | 2920.4Kbp | 0.0K | 1.0K | 2920.4Kbp | 3.0Mbp | 99.0 | 306.31 | 17.54 | 2438 | 86 | 92.5% |
| NY82541265_scaffold_closed | 3132.3Kbp | 3132.3Kbp | 0.0K | 1.0K | 3132.3Kbp | 3.3Mbp | 107.0 | 1418.29 | 70.27 | 2548 | 76 | 86.2% |
| NY82541376_scaffold_closed | 2832.3Kbp | 2832.3Kbp | 0.0K | 1.0K | 2832.3Kbp | 2.9Mbp | 164.0 | 993.94 | 56.81 | 2286 | 96 | 87.8% |
| NY82544264_scaffold_closed | 3179.6Kbp | 3179.6Kbp | 0.0K | 1.0K | 3179.6Kbp | 3.3Mbp | 141.0 | 1404.24 | 72.75 | 2479 | 108 | 84.5% |
| NY82544306_scaffold_closed | 3078.5Kbp | 3078.5Kbp | 0.0K | 1.0K | 3078.5Kbp | 3.3Mbp | 144.0 | 1391.20 | 73.20 | 2470 | 109 | 84.2% |
| NY82544348_scaffold_closed | 3012.8Kbp | 3012.8Kbp | 0.0K | 1.0K | 3012.8Kbp | 3.3Mbp | 104.0 | 1358.80 | 69.80 | 2331 | 62 | 88.1% |
| NY83889968_scaffold_closed | 3033.0Kbp | 3033.0Kbp | 0.0K | 1.0K | 3033.0Kbp | 3.2Mbp | 108.0 | 393.41 | 20.80 | 2462 | 67 | 93.7% |
| NY83890009_scaffold_closed | 2860.6Kbp | 2860.6Kbp | 0.0K | 1.0K | 2860.6Kbp | 2.9Mbp | 80.0 | 408.29 | 21.66 | 2450 | 54 | 92.9% |
| NY83899388_scaffold_closed | 3141.4Kbp | 3141.4Kbp | 0.0K | 1.0K | 3141.4Kbp | 3.3Mbp | 111.0 | 1410.20 | 68.47 | 2501 | 78 | 85.1% |
| NY83901777_scaffold_closed | 3161.7Kbp | 3161.7Kbp | 0.0K | 1.0K | 3161.7Kbp | 3.2Mbp | 102.0 | 1351.67 | 67.77 | 2352 | 60 | 88.5% |
| NY83905249_scaffold_closed | 3217.7Kbp | 3217.7Kbp | 0.0K | 1.0K | 3217.7Kbp | 3.3Mbp | 109.0 | 1433.32 | 71.91 | 2511 | 65 | 84.0% |
| NY83905351_scaffold_closed | 3357.0Kbp | 3357.0Kbp | 0.0K | 1.0K | 3357.0Kbp | 3.4Mbp | 80.0 | 1182.57 | 56.43 | 2664 | 58 | 89.4% |
| NY83905468_scaffold_closed | 3253.3Kbp | 3253.3Kbp | 0.0K | 1.0K | 3253.3Kbp | 3.3Mbp | 64.0 | 1168.41 | 56.99 | 2681 | 53 | 90.6% |
| NY83905721_scaffold_closed | 3285.9Kbp | 3285.9Kbp | 0.0K | 1.0K | 3285.9Kbp | 3.4Mbp | 44.0 | 740.38 | 37.35 | 2753 | 46 | 92.7% |
| NY83905795_scaffold_closed | 3162.7Kbp | 3162.7Kbp | 0.0K | 1.0K | 3162.7Kbp | 3.3Mbp | 71.0 | 1108.83 | 56.25 | 2672 | 72 | 90.3% |
| NY83906076_scaffold_closed | 3429.6Kbp | 3429.6Kbp | 0.0K | 1.0K | 3429.6Kbp | 3.5Mbp | 78.0 | 1211.36 | 54.08 | 2658 | 45 | 89.4% |
| NY83906155_scaffold_closed | 3140.6Kbp | 3140.6Kbp | 0.0K | 1.0K | 3140.6Kbp | 3.4Mbp | 105.0 | 1362.59 | 68.77 | 2329 | 65 | 88.5% |
| NY83906252_scaffold_closed | 3137.1Kbp | 3137.1Kbp | 0.0K | 1.0K | 3137.1Kbp | 3.3Mbp | 119.0 | 1443.17 | 70.75 | 2462 | 92 | 83.3% |
| NY83906307_scaffold_closed | 3151.7Kbp | 3151.7Kbp | 0.0K | 1.0K | 3151.7Kbp | 3.3Mbp | 109.0 | 1459.78 | 70.80 | 2496 | 69 | 83.7% |
| NY83906381_scaffold_closed | 3307.8Kbp | 3307.8Kbp | 0.0K | 1.0K | 3307.8Kbp | 3.3Mbp | 60.0 | 1136.74 | 51.90 | 2678 | 61 | 91.0% |
| NY83906509_scaffold_closed | 3332.5Kbp | 3332.5Kbp | 0.0K | 1.0K | 3332.5Kbp | 3.8Mbp | 46.0 | 196.76 | 12.74 | 2812 | 37 | 94.1% |
| NY83906602_scaffold_closed | 3276.3Kbp | 3276.3Kbp | 0.0K | 1.0K | 3276.3Kbp | 3.4Mbp | 80.0 | 1132.54 | 52.55 | 2685 | 75 | 91.0% |
| NY83906647_scaffold_closed | 3343.7Kbp | 3343.7Kbp | 0.0K | 1.0K | 3343.7Kbp | 3.5Mbp | 66.0 | 875.27 | 41.22 | 2666 | 45 | 90.0% |
| NY83909353_scaffold_closed | 3231.9Kbp | 3231.9Kbp | 0.0K | 1.0K | 3231.9Kbp | 3.4Mbp | 75.0 | 1127.85 | 54.34 | 2685 | 60 | 90.9% |
| NY83909409_scaffold_closed | 3233.7Kbp | 3233.7Kbp | 0.0K | 1.0K | 3233.7Kbp | 3.3Mbp | 64.0 | 1123.06 | 53.43 | 2667 | 57 | 89.4% |
| NY83909666_scaffold_closed | 3240.8Kbp | 3240.8Kbp | 0.0K | 1.0K | 3240.8Kbp | 3.3Mbp | 67.0 | 1137.38 | 52.01 | 2635 | 47 | 88.8% |
| NY83909731_scaffold_closed | 3225.7Kbp | 3225.7Kbp | 0.0K | 1.0K | 3225.7Kbp | 3.3Mbp | 90.0 | 1046.39 | 50.40 | 2555 | 66 | 87.1% |
| NY84134821_scaffold_closed | 3338.6Kbp | 3338.6Kbp | 0.0K | 1.0K | 3338.6Kbp | 3.4Mbp | 85.0 | 1150.20 | 57.08 | 2686 | 74 | 91.0% |
| NY84135059_scaffold_closed | 3277.1Kbp | 3277.1Kbp | 0.0K | 1.0K | 3277.1Kbp | 3.4Mbp | 115.0 | 1464.45 | 66.78 | 2580 | 71 | 86.5% |
| NY84135159_scaffold_closed | 3233.3Kbp | 3233.3Kbp | 0.0K | 1.0K | 3233.3Kbp | 3.3Mbp | 58.0 | 1227.08 | 56.23 | 2691 | 59 | 90.8% |
| NY84136597_scaffold_closed | 3082.0Kbp | 3082.0Kbp | 0.0K | 1.0K | 3082.0Kbp | 3.3Mbp | 91.0 | 1358.00 | 68.05 | 2339 | 57 | 88.2% |
| NY84139156_scaffold_closed | 2910.5Kbp | 2910.5Kbp | 0.0K | 1.0K | 2910.5Kbp | 3.0Mbp | 148.0 | 999.84 | 51.09 | 2315 | 87 | 89.0% |
| NY84139278_scaffold_closed | 2895.8Kbp | 2895.8Kbp | 0.0K | 1.0K | 2895.8Kbp | 3.0Mbp | 147.0 | 1004.77 | 51.48 | 2314 | 79 | 88.4% |
| NY84139376_scaffold_closed | 2725.0Kbp | 2725.0Kbp | 0.0K | 1.0K | 2725.0Kbp | 2.8Mbp | 149.0 | 1000.25 | 51.40 | 2203 | 84 | 84.7% |
| NY84139692_scaffold_closed | 3298.8Kbp | 3298.8Kbp | 0.0K | 1.0K | 3298.8Kbp | 3.4Mbp | 65.0 | 1175.92 | 53.13 | 2687 | 47 | 90.5% |
| NY84140474_scaffold_closed | 2886.2Kbp | 2886.2Kbp | 0.0K | 1.0K | 2886.2Kbp | 2.9Mbp | 137.0 | 1003.77 | 51.22 | 2320 | 75 | 88.5% |
| NY84141151_scaffold_closed | 2897.9Kbp | 2897.9Kbp | 0.0K | 1.0K | 2897.9Kbp | 3.0Mbp | 143.0 | 1004.47 | 50.96 | 2315 | 88 | 88.7% |
| NY84141319_scaffold_closed | 2886.5Kbp | 2886.5Kbp | 0.0K | 1.0K | 2886.5Kbp | 2.9Mbp | 129.0 | 1003.64 | 51.11 | 2318 | 75 | 88.5% |
| NY84149594_scaffold_closed | 3366.2Kbp | 3366.2Kbp | 0.0K | 1.0K | 3366.2Kbp | 3.4Mbp | 57.0 | 917.46 | 44.76 | 2708 | 44 | 91.0% |
| NY84159705_scaffold_closed | 3437.4Kbp | 3437.4Kbp | 0.0K | 1.0K | 3437.4Kbp | 3.7Mbp | 370.0 | 1155.99 | 52.77 | 2443 | 338 | 91.6% |
| NY87436858_scaffold_closed | 3318.2Kbp | 3318.2Kbp | 0.0K | 1.0K | 3318.2Kbp | 3.4Mbp | 90.0 | 1164.07 | 55.72 | 2642 | 73 | 89.1% |
| NY87437283_scaffold_closed | 3005.0Kbp | 3005.0Kbp | 0.0K | 1.0K | 3005.0Kbp | 3.3Mbp | 95.0 | 1350.28 | 68.00 | 2339 | 49 | 88.0% |
| NY87439753_scaffold_closed | 3147.6Kbp | 3147.6Kbp | 0.0K | 1.0K | 3147.6Kbp | 3.3Mbp | 95.0 | 1355.34 | 67.68 | 2335 | 53 | 88.1% |
| NY87439862_scaffold_closed | 3152.2Kbp | 3152.2Kbp | 0.0K | 1.0K | 3152.2Kbp | 3.3Mbp | 100.0 | 1355.29 | 67.70 | 2335 | 59 | 88.2% |
| NY87439973_scaffold_closed | 3228.5Kbp | 3228.5Kbp | 0.0K | 1.0K | 3228.5Kbp | 3.3Mbp | 111.0 | 1419.31 | 69.04 | 2547 | 84 | 86.2% |
| NY87454761_scaffold_closed | 3291.0Kbp | 3291.0Kbp | 0.0K | 1.0K | 3291.0Kbp | 3.4Mbp | 66.0 | 1179.23 | 53.68 | 2684 | 50 | 90.4% |
| NY87454804_scaffold_closed | 3292.0Kbp | 3292.0Kbp | 0.0K | 1.0K | 3292.0Kbp | 3.4Mbp | 66.0 | 1177.14 | 53.68 | 2690 | 50 | 90.5% |
| NY87454849_scaffold_closed | 3293.8Kbp | 3293.8Kbp | 0.0K | 1.0K | 3293.8Kbp | 3.4Mbp | 65.0 | 1186.28 | 53.94 | 2692 | 47 | 90.5% |
| NY87454897_scaffold_closed | 3240.1Kbp | 3240.1Kbp | 0.0K | 1.0K | 3240.1Kbp | 3.4Mbp | 67.0 | 1179.10 | 55.45 | 2674 | 58 | 90.3% |
| NY87455425_scaffold_closed | 2886.8Kbp | 2886.8Kbp | 0.0K | 1.0K | 2886.8Kbp | 3.0Mbp | 141.0 | 1002.06 | 51.20 | 2307 | 82 | 88.6% |
| NY87455467_scaffold_closed | 2819.0Kbp | 2819.0Kbp | 0.0K | 1.0K | 2819.0Kbp | 2.9Mbp | 161.0 | 994.89 | 51.59 | 2293 | 90 | 88.0% |
| NY87455515_scaffold_closed | 2861.5Kbp | 2861.5Kbp | 0.0K | 1.0K | 2861.5Kbp | 3.0Mbp | 135.0 | 1001.93 | 53.29 | 2307 | 87 | 88.5% |
| NY87455557_scaffold_closed | 2888.2Kbp | 2888.2Kbp | 0.0K | 1.0K | 2888.2Kbp | 3.0Mbp | 126.0 | 1002.12 | 52.46 | 2315 | 72 | 88.6% |
| W7KF_scaffold_closed | 2702.9Kbp | 2702.9Kbp | 0.0K | 1.0K | 2702.9Kbp | 3.2Mbp | 96.0 | 1471.90 | 70.73 | 2561 | 50 | 86.2% |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Bowtie 2
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
This plot shows the number of reads aligning to the reference in different ways.
There are 3 possible types of alignment: SE Mapped uniquely: Read has only one occurence in the reference genome. SE Multimapped: Read has multiple occurence. * SE No aligned: Read has no occurence.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Trimmomatic
Trimmomatic is a flexible read trimming tool for Illumina NGS data.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
FastQC
FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.
Sequence Quality Histograms
The mean quality value across each base position in the read. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Per Sequence Quality Scores
The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Per Base Sequence Content
The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.
Rollover for sample name
Per Sequence GC Content
The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Per Base N Content
The percentage of base calls at each position for which an N was called. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Sequence Length Distribution
The distribution of fragment sizes (read lengths) found. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Sequence Duplication Levels
The relative level of duplication found for every sequence. See the FastQC help.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).
Overrepresented sequences
The total amount of overrepresented sequences found in each library. See the FastQC help for further information.
Adapter Content
The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.
Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).